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Reaction Network


A reaction network is a finite directed graph whose vertices, called complexes, are multisets of d species, represented by vectors in Z_(>=0)^d, and whose directed edges are reactions y->y^' (Boros and Hofbauer 2020). The nonnegative integer coordinates of a complex give its species multiplicities. For example, 2A+B is the complex (2,1) in a two-species network. Each reaction determines the vector y^'-y, and their vector space span is the stoichiometric subspace. Assigning positive rate constants and using the monomials x^y yields a mass-action system (Gunawardena 2003, pp. 3-5). A weakly reversible reaction network has a directed graph path from y^' back to y for every reaction y->y^'.


See also

Directed Graph, Mass-Action System, Multiset, Stoichiometric Subspace, Weakly Reversible Reaction Network

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References

Boros, B. and Hofbauer, J. "Permanence of Weakly Reversible Mass-Action Systems with a Single Linkage Class." SIAM J. Appl. Dyn. Syst. 19, 352-365, 2020. https://doi.org/10.1137/19M1248431.Gunawardena, J. "Chemical Reaction Network Theory for In-Silico Biologists." 20 Jun 2003. https://vcp.upf.edu/papers/crnt.pdf.

Cite this as:

Weisstein, Eric W. "Reaction Network." From MathWorld--A Wolfram Resource. https://mathworld.wolfram.com/ReactionNetwork.html

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